3ZFJ image
Deposition Date 2012-12-11
Release Date 2013-11-20
Last Version Date 2024-06-19
Entry Detail
PDB ID:
3ZFJ
Title:
N-terminal domain of pneumococcal PhtD protein with bound Zn(II)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
1000
Conformers Submitted:
20
Selection Criteria:
TOTAL ENERGY
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PNEUMOCOCCAL HISTIDINE TRIAD PROTEIN D
Chain IDs:A
Chain Length:138
Number of Molecules:1
Biological Source:STREPTOCOCCUS PNEUMONIAE
Ligand Molecules
Primary Citation
New Insights Into Histidine Triad Proteins: Solution Structure of a Streptococcus Pneumoniae Phtd Domain and Zinc Transfer to Adcaii.
Plos One 8 81168 ? (2013)
PMID: 24312273 DOI: 10.1371/JOURNAL.PONE.0081168

Abstact

Zinc (Zn(2+)) homeostasis is critical for pathogen host colonization and invasion. Polyhistidine triad (Pht) proteins, located at the surface of various streptococci, have been proposed to be involved in Zn(2+) homeostasis. The phtD gene, coding for a Zn(2+)-binding protein, is organized in an operon with adcAII coding for the extracellular part of a Zn(2+) transporter. In the present work, we investigate the relationship between PhtD and AdcAII using biochemical and structural biology approaches. Immuno-precipitation experiments on purified membranes of Streptococcus pneumoniae (S. pneumoniae) demonstrate that native PhtD and AdcAII interact in vivo confirming our previous in vitro observations. NMR was used to demonstrate Zn(2+) transfer from the Zn(2+)-bound form of a 137 amino acid N-terminal domain of PhtD (t-PhtD) to AdcAII. The high resolution NMR structure of t-PhtD shows that Zn(2+) is bound in a tetrahedral site by histidines 83, 86, and 88 as well as by glutamate 63. Comparison of the NMR parameters measured for apo- and Zn(2+)-t-PhtD shows that the loss of Zn(2+) leads to a diminished helical propensity at the C-terminus and increases the local dynamics and overall molecular volume. Structural comparison with the crystal structure of a 55-long fragment of PhtA suggests that Pht proteins are built from short repetitive units formed by three β-strands containing the conserved HxxHxH motif. Taken together, these results support a role for S. pneumoniae PhtD as a Zn(2+) scavenger for later release to the surface transporter AdcAII, leading to Zn(2+) uptake.

Legend

Protein

Chemical

Disease

Primary Citation of related structures