3ZE9 image
Deposition Date 2012-12-03
Release Date 2013-06-12
Last Version Date 2023-12-20
Entry Detail
PDB ID:
3ZE9
Keywords:
OXIDOREDUCTASE
Title:
3D structure of the NiFeSe hydrogenase from D. vulgaris Hildenborough in the oxidized as-isolated state at 1.33 Angstroms
Biological Source:
Source Organism:
DESULFOVIBRIO VULGARIS (Taxon ID: 882)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.33 Å
R-Value Free:
0.14
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
C 1 2 1
3ZE9 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNIT
Gene (Uniprot):hysB
Chain IDs:A
Chain Length:283
Number of Molecules:1
Biological Source:DESULFOVIBRIO VULGARIS
UniProt ID:Q72AS4 Pfam ID:PF01058, PF14720
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING
Gene (Uniprot):hysA
Chain IDs:B
Chain Length:484
Number of Molecules:1
Biological Source:DESULFOVIBRIO VULGARIS
UniProt ID:Q72AS3 Pfam ID:PF00374
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSS A CYS S-MERCAPTOCYSTEINE
OCS B CYS CYSTEINESULFONIC ACID
PSW B SEC 3-(SULFANYLSELANYL)-L-ALANINE
Ligand Molecules
CL
FCO
FE2
FSX
NI
SF4
Primary Citation
Redox State-Dependent Changes in the Crystal Structure of [Nifese] Hydrogenase from Desulfovibrio Vulgaris Hildenborough
Int.J.Hydrogen Energy 38 8664 ? (2013)
DOI: 10.1016/J.IJHYDENE.2013.04.132
Primary Citation of related structures
3ZE6
3ZE7
3ZE8
3ZEA