3X34 image
Deposition Date 2015-01-14
Release Date 2015-07-15
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3X34
Title:
Crystal structure of the reduced form of the solubilized domain of porcine cytochrome b5 in form 1 crystal
Biological Source:
Source Organism:
Sus scrofa (Taxon ID: 9823)
Host Organism:
Method Details:
Experimental Method:
Resolution:
0.76 Å
R-Value Free:
0.13
R-Value Work:
0.10
R-Value Observed:
0.10
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b5
Gene (Uniprot):CYB5A
Chain IDs:A
Chain Length:94
Number of Molecules:1
Biological Source:Sus scrofa
Primary Citation
High-resolution crystal structures of the solubilized domain of porcine cytochrome b5.
Acta Crystallogr.,Sect.D 71 1572 1581 (2015)
PMID: 26143928 DOI: 10.1107/S1399004715009438

Abstact

Mammalian microsomal cytochrome b5 has multiple electron-transfer partners that function in various electron-transfer reactions. Four crystal structures of the solubilized haem-binding domain of cytochrome b5 from porcine liver were determined at sub-angstrom resolution (0.76-0.95 Å) in two crystal forms for both the oxidized and reduced states. The high-resolution structures clearly displayed the electron density of H atoms in some amino-acid residues. Unrestrained refinement of bond lengths revealed that the protonation states of the haem propionate group may be involved in regulation of the haem redox properties. The haem Fe coordination geometry did not show significant differences between the oxidized and reduced structures. However, structural differences between the oxidized and reduced states were observed in the hydrogen-bond network around the axial ligand His68. The hydrogen-bond network could be involved in regulating the redox states of the haem group.

Legend

Protein

Chemical

Disease

Primary Citation of related structures