3X2O image
Entry Detail
PDB ID:
3X2O
Keywords:
Title:
Neutron and X-ray joint refined structure of PcCel45A apo form at 298K.
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2014-12-22
Release Date:
2015-10-07
Method Details:
R-Value Free:
['0.25
R-Value Work:
['0.22
R-Value Observed:
['0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Endoglucanase V-like protein
Chain IDs:A
Chain Length:180
Number of Molecules:1
Biological Source:Phanerochaete chrysosporium
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
41Q A ASN 4-IMINO-L-HOMOSERINE
Ligand Molecules
Primary Citation
"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv 1 e1500263 e1500263 (2015)
PMID: 26601228 DOI: 10.1126/sciadv.1500263

Abstact

Hydrolysis of carbohydrates is a major bioreaction in nature, catalyzed by glycoside hydrolases (GHs). We used neutron diffraction and high-resolution x-ray diffraction analyses to investigate the hydrogen bond network in inverting cellulase PcCel45A, which is an endoglucanase belonging to subfamily C of GH family 45, isolated from the basidiomycete Phanerochaete chrysosporium. Examination of the enzyme and enzyme-ligand structures indicates a key role of multiple tautomerizations of asparagine residues and peptide bonds, which are finally connected to the other catalytic residue via typical side-chain hydrogen bonds, in forming the "Newton's cradle"-like proton relay pathway of the catalytic cycle. Amide-imidic acid tautomerization of asparagine has not been taken into account in recent molecular dynamics simulations of not only cellulases but also general enzyme catalysis, and it may be necessary to reconsider our interpretation of many enzymatic reactions.

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Primary Citation of related structures