3X2I image
Deposition Date 2014-12-22
Release Date 2015-10-07
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3X2I
Keywords:
Title:
X-ray structure of PcCel45A N92D apo form at 298K.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.15
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Endoglucanase V-like protein
Gene (Uniprot):egv
Mutations:N92D
Chain IDs:A
Chain Length:180
Number of Molecules:1
Biological Source:Phanerochaete chrysosporium
Ligand Molecules
Primary Citation
"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv 1 e1500263 e1500263 (2015)
PMID: 26601228 DOI: 10.1126/sciadv.1500263

Abstact

Hydrolysis of carbohydrates is a major bioreaction in nature, catalyzed by glycoside hydrolases (GHs). We used neutron diffraction and high-resolution x-ray diffraction analyses to investigate the hydrogen bond network in inverting cellulase PcCel45A, which is an endoglucanase belonging to subfamily C of GH family 45, isolated from the basidiomycete Phanerochaete chrysosporium. Examination of the enzyme and enzyme-ligand structures indicates a key role of multiple tautomerizations of asparagine residues and peptide bonds, which are finally connected to the other catalytic residue via typical side-chain hydrogen bonds, in forming the "Newton's cradle"-like proton relay pathway of the catalytic cycle. Amide-imidic acid tautomerization of asparagine has not been taken into account in recent molecular dynamics simulations of not only cellulases but also general enzyme catalysis, and it may be necessary to reconsider our interpretation of many enzymatic reactions.

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Primary Citation of related structures