3X0Y image
Deposition Date 2014-10-23
Release Date 2015-02-25
Last Version Date 2024-05-29
Entry Detail
PDB ID:
3X0Y
Keywords:
Title:
Crystal structure of FMN-bound DszC from Rhodococcus erythropolis D-1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DszC
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:417
Number of Molecules:8
Biological Source:Rhodococcus erythropolis
Ligand Molecules
Primary Citation
Crystal structures of apo-DszC and FMN-bound DszC from Rhodococcus erythropolis D-1.
Febs J. 282 3126 3135 (2015)
PMID: 25627402 DOI: 10.1111/febs.13216

Abstact

UNLABELLED The release of SO2 from petroleum products derived from crude oil, which contains sulfur compounds such as dibenzothiophene (DBT), leads to air pollution. The '4S' metabolic pathway catalyzes the sequential conversion of DBT to 2-hydroxybiphenyl via three enzymes encoded by the dsz operon in several bacterial species. DszC (DBT monooxygenase), from Rhodococcus erythropolis D-1 is involved in the first two steps of the '4S' pathway. Here, we determined the first crystal structure of FMN-bound DszC, and found that two distinct conformations occur in the loop region (residues 131-142) adjacent to the active site. On the basis of the DszC-FMN structure and the previously reported apo structures of DszC homologs, the binding site for DBT and DBT sulfoxide is proposed. DATABASE The atomic coordinates and structure factors for apo-DszC (PDB code: 3X0X) and DszC-FMN (PDB code: 3X0Y) have been deposited in the Protein Data Bank (http://www.rcsb.org).

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Primary Citation of related structures