3X0A image
Deposition Date 2014-10-09
Release Date 2015-10-14
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3X0A
Keywords:
Title:
Crystal structure of PIP4KIIBETA F205L complex with GMP
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phosphatidylinositol 5-phosphate 4-kinase type-2 beta
Gene (Uniprot):PIP4K2B
Mutations:F205L
Chain IDs:A, B
Chain Length:393
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The Lipid Kinase PI5P4K beta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis
Mol.Cell 61 187 198 (2016)
PMID: 26774281 DOI: 10.1016/j.molcel.2015.12.011

Abstact

While cellular GTP concentration dramatically changes in response to an organism's cellular status, whether it serves as a metabolic cue for biological signaling remains elusive due to the lack of molecular identification of GTP sensors. Here we report that PI5P4Kβ, a phosphoinositide kinase that regulates PI(5)P levels, detects GTP concentration and converts them into lipid second messenger signaling. Biochemical analyses show that PI5P4Kβ preferentially utilizes GTP, rather than ATP, for PI(5)P phosphorylation, and its activity reflects changes in direct proportion to the physiological GTP concentration. Structural and biological analyses reveal that the GTP-sensing activity of PI5P4Kβ is critical for metabolic adaptation and tumorigenesis. These results demonstrate that PI5P4Kβ is the missing GTP sensor and that GTP concentration functions as a metabolic cue via PI5P4Kβ. The critical role of the GTP-sensing activity of PI5P4Kβ in cancer signifies this lipid kinase as a cancer therapeutic target.

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Primary Citation of related structures