3WYP image
Deposition Date 2014-09-05
Release Date 2014-12-24
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3WYP
Title:
Crystal structure of wild-type core streptavidin in complex with D-biotin/biotin-D-sulfoxide at 1.3 A resolution
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.17
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Streptavidin
Chain IDs:A, B, C (auth: D), D (auth: C)
Chain Length:127
Number of Molecules:4
Biological Source:Streptomyces avidinii
Primary Citation
Crystal structure of streptavidin mutant with low immunogenicity.
J.Biosci.Bioeng. 119 642 647 (2015)
PMID: 25434833 DOI: 10.1016/j.jbiosc.2014.10.025

Abstact

We previously created a low-immunogenic core streptavidin mutant No. 314 (LISA-314) by replacing six amino-acid residues for use as a delivery tool for an antibody multistep pre-targeting process (Yumura et al., Protein Sci., 22, 213-221, 2013). Here, we performed high-resolution X-ray structural analyses of LISA-314 and wild-type streptavidin to investigate the effect of substitutions on the protein function and the three-dimensional structure. LISA-314 forms a tetramer in the same manner as wild-type streptavidin. The binding mode of d-biotin in LISA-314 is also completely identical to that in wild-type streptavidin, and conformational changes were observed mostly at the side chains of substituted sites. Any large conformational changes corresponding to the reduction of B factors around the substituted sites were not observed. These results demonstrated the LISA-314 acquired low immunogenicity without losing structural properties of original wild-type streptavidin.

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Primary Citation of related structures