3WXI image
Entry Detail
PDB ID:
3WXI
Keywords:
Title:
Crystal structure of trypanosoma brucei gambiense glycerol kinase (ligand-free form)
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2014-08-01
Release Date:
2014-12-24
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.28
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Glycerol kinase
Chain IDs:A, B
Chain Length:518
Number of Molecules:2
Biological Source:Trypanosoma brucei gambiense
Primary Citation
Molecular basis for the reverse reaction of African human trypanosomes glycerol kinase.
Mol.Microbiol. 94 1315 1329 (2014)
PMID: 25315291 DOI: 10.1111/mmi.12831

Abstact

The glycerol kinase (GK) of African human trypanosomes is compartmentalized in their glycosomes. Unlike the host GK, which under physiological conditions catalyzes only the forward reaction (ATP-dependent glycerol phosphorylation), trypanosome GK can additionally catalyze the reverse reaction. In fact, owing to this unique reverse catalysis, GK is potentially essential for the parasites survival in the human host, hence a promising drug target. The mechanism of its reverse catalysis was unknown; therefore, it was not clear if this ability was purely due to its localization in the organelles or whether structure-based catalytic differences also contribute. To investigate this lack of information, the X-ray crystal structure of this protein was determined up to 1.90 Å resolution, in its unligated form and in complex with three natural ligands. These data, in conjunction with results from structure-guided mutagenesis suggests that the trypanosome GK is possibly a transiently autophosphorylating threonine kinase, with the catalytic site formed by non-conserved residues. Our results provide a series of structural peculiarities of this enzyme, and gives unexpected insight into the reverse catalysis mechanism. Together, they provide an encouraging molecular framework for the development of trypanosome GK-specific inhibitors, which may lead to the design of new and safer trypanocidal drug(s).

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