3WWD image
Deposition Date 2014-06-17
Release Date 2015-04-29
Last Version Date 2023-12-06
Entry Detail
PDB ID:
3WWD
Keywords:
Title:
The complex of pOPH_S172C with DMSO
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oxidized polyvinyl alcohol hydrolase
Gene (Uniprot):pvaB
Mutagens:S172C
Chain IDs:A
Chain Length:364
Number of Molecules:1
Biological Source:Pseudomonas sp. VM15C
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
OCS A CYS CYSTEINESULFONIC ACID
Primary Citation
Roles of tryptophan residue and disulfide bond in the variable lid region of oxidized polyvinyl alcohol hydrolase
Biochem.Biophys.Res.Commun. 452 509 514 (2014)
PMID: 25173935 DOI: 10.1016/j.bbrc.2014.08.106

Abstact

Oxidized polyvinyl alcohol hydrolase (OPH) catalyzes the cleavage of C-C bond in β-diketone. It belongs to the α/β-hydrolase family and contains a unique lid region that covers the active site. The lid is the most variable region when pOPH from Pseudomonas sp. VM15C and sOPH from Sphingopyxis sp. 113P3 are compared. The wild-type enzymes and the pOPH mutants W255A, W255Y and W255F were analyzed for lipase activity by using p-nitrophenyl (pNP) esters as the substrates. The wild-type enzymes showed increased Km and decreased kcat/Km with the acyl chain length, and the mutants showed reduced kcat/Km for pNP acetate, indicating the importance of Trp255 in sequestering the active site from solvent. The significantly lower activity for pNP butyrate can be a result of product inhibition, as suggested by the complex crystal structures, in which butyric acid, DMSO or PEG occupied the same substrate-binding cleft. The mutant activity was retained with pNP caprylate and pNP laurate as the substrates, reflecting the amphipathic nature of the cleft. Moreover, the disulfide bond formation of Cys257/267 is important for the activity of pOPH, but it is not essential for sOPH, which has a shorter lid structure.

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Primary Citation of related structures
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