3WVE image
Entry Detail
PDB ID:
3WVE
Keywords:
Title:
Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, before photo-activation
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-05-17
Release Date:
2015-06-17
Method Details:
Experimental Method:
Resolution:
1.57 Å
R-Value Free:
0.17
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Nitrile hydratase subunit alpha
Chain IDs:A
Chain Length:207
Number of Molecules:1
Biological Source:Rhodococcus erythropolis
Polymer Type:polypeptide(L)
Description:Nitrile hydratase subunit beta
Mutations:R56K
Chain IDs:B
Chain Length:212
Number of Molecules:1
Biological Source:Rhodococcus erythropolis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSD A CYS 3-SULFINOALANINE
CSO A CYS S-HYDROXYCYSTEINE
Primary Citation
Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl. 54 10763 10767 (2015)
PMID: 26333053 DOI: 10.1002/anie.201502731

Abstact

The reaction mechanism of nitrile hydratase (NHase) was investigated using time-resolved crystallography of the mutant NHase, in which βArg56, strictly conserved and hydrogen bonded to the two post-translationally oxidized cysteine ligands, was replaced by lysine, and pivalonitrile was the substrate. The crystal structures of the reaction intermediates were determined at high resolution (1.2-1.3 Å). In combination with FTIR analyses of NHase following hydration in H2 (18) O, we propose that the metal-coordinated substrate is nucleophilically attacked by the O(SO(-)) atom of αCys114-SO(-) , followed by nucleophilic attack of the S(SO(-)) atom by a βArg56-activated water molecule to release the product amide and regenerate αCys114-SO(-) .

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Primary Citation of related structures