3WUE image
Deposition Date 2014-04-23
Release Date 2014-10-29
Last Version Date 2024-11-13
Entry Detail
PDB ID:
3WUE
Keywords:
Title:
The wild type crystal structure of b-1,4-Xylanase (XynAS9) with xylobiose from Streptomyces sp. 9
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.23
R-Value Work:
0.20
Space Group:
P 65 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Endo-1,4-beta-xylanase A
Gene (Uniprot):xynAS9
Chain IDs:A
Chain Length:313
Number of Molecules:1
Biological Source:Streptomyces sp.
Ligand Molecules
Peptide-like Molecules
PRD_900116
Primary Citation
Structural perspectives of an engineered beta-1,4-xylanase with enhanced thermostability.
J.Biotechnol. 189C 175 182 (2014)
PMID: 25193708 DOI: 10.1016/j.jbiotec.2014.08.030

Abstact

The glycoside hydrolase 10 (GH10) xylanase from Streptomyces sp. 9 (XynAS9) can operate in a broad range of pH and temperature, and thus is a potential candidate for commercial applications. Recently, we engineered XynAS9 via mutating several residues in accordance with the consensus sequences of GH10 thermophilic xylanases in an attempt to improve the enzyme thermostability and thermotolerance. The most promising effects were observed in the double mutant V81P/G82E. In order to investigate the molecular mechanism of the improved thermal profile of XynAS9, complex crystal structures of the wild type (WT) and mutant (MT) enzyme were solved at 1.88-2.05Å resolution. The structures reveal a classical GH10 (β/α)8 TIM-barrel fold. In MT XynAS9, E82 forms several interactions to its neighboring residues, which might aid in stabilizing the local structure. Furthermore, the MT structure showed lower B factors for individual residues compared to the WT structure, reflecting the increased MT protein rigidity. Analyses of the XynAS9 structures also delineate the detailed enzyme-substrate interaction network. More importantly, possible explanations for the enhanced thermal profiles of MT XynAS9 are proposed, which may be a useful strategy for enzyme engineering in the future.

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Primary Citation of related structures
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