3WSY image
Deposition Date 2014-03-30
Release Date 2015-02-04
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3WSY
Keywords:
Title:
SorLA Vps10p domain in complex with its own propeptide fragment
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.11 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 41
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sortilin-related receptor
Gene (Uniprot):SORL1
Chain IDs:A
Chain Length:678
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:peptide from Sortilin-related receptor
Gene (Uniprot):SORL1
Chain IDs:B (auth: C)
Chain Length:15
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Structural basis for amyloidogenic peptide recognition by sorLA.
Nat.Struct.Mol.Biol. 22 199 206 (2015)
PMID: 25643321 DOI: 10.1038/nsmb.2954

Abstact

SorLA is a neuronal sorting receptor considered to be a major risk factor for Alzheimer's disease. We have recently reported that it directs lysosomal targeting of nascent neurotoxic amyloid-β (Aβ) peptides by directly binding Aβ. Here, we determined the crystal structure of the human sorLA domain responsible for Aβ capture, Vps10p, in an unbound state and in complex with two ligands. Vps10p assumes a ten-bladed β-propeller fold with a large tunnel at the center. An internal ligand derived from the sorLA propeptide bound inside the tunnel to extend the β-sheet of one of the propeller blades. The structure of the sorLA Vps10p-Aβ complex revealed that the same site is used. Peptides are recognized by sorLA Vps10p in redundant modes without strict dependence on a particular amino acid sequence, thus suggesting a broad specificity toward peptides with a propensity for β-sheet formation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures