3WSD image
Deposition Date 2014-03-13
Release Date 2014-08-27
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3WSD
Title:
Oxidized HcgD from Methanocaldococcus jannaschii
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative GTP cyclohydrolase 1 type 2
Chain IDs:A, B, C, D, E, F
Chain Length:252
Number of Molecules:6
Biological Source:Methanocaldococcus jannaschii
Primary Citation
A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett. 588 2789 2793 (2014)
PMID: 24931373 DOI: 10.1016/j.febslet.2014.05.059

Abstact

HcgD, a homolog of the ubiquitous Nif3-like protein family, is found in a gene cluster involved in the biosynthesis of the iron-guanylylpyridinol (FeGP) cofactor of [Fe]-hydrogenase. The presented crystal structure and biochemical analyses indicated that HcgD has a dinuclear iron-center, which provides a pronounced binding site for anionic ligands. HcgD contains a stronger and a weaker bound iron; the latter being removable by chelating reagents preferentially in the oxidized state. Therefore, we propose HcgD as an iron chaperone in FeGP cofactor biosynthesis, which might also stimulate investigations on the functionally unknown but physiologically important eukaryotic Nif3-like protein family members.

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Primary Citation of related structures
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