3WRT image
Entry Detail
PDB ID:
3WRT
Keywords:
Title:
Wild type beta-lactamase DERIVED FROM CHROMOHALOBACTER SP.560
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-02-27
Release Date:
2015-03-04
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Beta-lactamase
Chain IDs:A, B, C
Chain Length:367
Number of Molecules:3
Biological Source:Chromohalobacter sp. 560
Primary Citation
Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D 71 541 554 (2015)
PMID: 25760604 DOI: 10.1107/S1399004714027734

Abstact

Environmentally friendly absorbents are needed for Sr(2+) and Cs(+), as the removal of the radioactive Sr(2+) and Cs(+) that has leaked from the Fukushima Nuclear Power Plant is one of the most important problems in Japan. Halophilic proteins are known to have many acidic residues on their surface that can provide specific binding sites for metal ions such as Cs(+) or Sr(2+). The crystal structure of a halophilic β-lactamase from Chromohalobacter sp. 560 (HaBLA) was determined to resolutions of between 1.8 and 2.9 Å in space group P31 using X-ray crystallography. Moreover, the locations of bound Sr(2+) and Cs(+) ions were identified by anomalous X-ray diffraction. The location of one Cs(+)-specific binding site was identified in HaBLA even in the presence of a ninefold molar excess of Na(+) (90 mM Na(+)/10 mM Cs(+)). From an activity assay using isothermal titration calorimetry, the bound Sr(2+) and Cs(+) ions do not significantly affect the enzymatic function of HaBLA. The observation of a selective and high-affinity Cs(+)-binding site provides important information that is useful for the design of artificial Cs(+)-binding sites that may be useful in the bioremediation of radioactive isotopes.

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