3WN5 image
Deposition Date 2013-12-05
Release Date 2014-11-19
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3WN5
Keywords:
Title:
Crystal structure of asymmetrically engineered Fc variant in complex with FcgRIIIa
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.78 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ig gamma-1 chain C region
Gene (Uniprot):IGHG1
Mutations:C220S, D270E, K326D, A330K, K334E, D356C, T366S, L368A, Y407V
Chain IDs:A, D
Chain Length:230
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Ig gamma-1 chain C region
Gene (Uniprot):IGHG1
Mutations:C220S, L234Y, L235Y, G236W, S239M, H268D, S298A, A327D, Y349C, T366W
Chain IDs:B, E
Chain Length:230
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Low affinity immunoglobulin gamma Fc region receptor III-A
Gene (Uniprot):FCGR3A
Mutations:N35Q, N71Q, N166Q
Chain IDs:C, F
Chain Length:197
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN D ASN GLYCOSYLATION SITE
Primary Citation
Crystal structure of a novel asymmetrically engineered Fc variant with improved affinity for Fc gamma Rs.
Mol.Immunol. 58 132 138 (2014)
PMID: 24334029 DOI: 10.1016/j.molimm.2013.11.017

Abstact

Enhancing the effector function by optimizing the interaction between Fc and Fcγ receptor (FcγR) is a promising approach to enhance the potency of anticancer monoclonal antibodies (mAbs). To date, a variety of Fc engineering approaches to modulate the interaction have been reported, such as afucosylation in the heavy chain Fc region or symmetrically introducing amino acid substitutions into the region, and there is still room to improve FcγR binding and thermal stability of the CH2 domain with these approaches. Recently, we have reported that asymmetric Fc engineering, which introduces different substitutions into each Fc region of heavy chain, can further improve the FcγR binding while maintaining the thermal stability of the CH2 domain by fine-tuning the asymmetric interface between the Fc domain and FcγR. However, the structural mechanism by which the asymmetrically engineered Fc improved FcγR binding remained unclear. In order to elucidate the mechanism, we solved the crystal structure of a novel asymmetrically engineered Fc, asym-mAb23, in complex with FcγRIIIa. Asym-mAb23 has enhanced binding affinity for both FcγRIIIa and FcγRIIa at the highest level of previously reported Fc variants. The structural analysis reveals the features of the asymmetrically engineered Fc in comparison with symmetric Fc and how each asymmetrically introduced substitution contributes to the improved interaction between asym-mAb23 and FcγRIIIa. This crystal structure could be utilized to enable us to design a more potent asymmetric Fc.

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