3WMM image
Entry Detail
PDB ID:
3WMM
Keywords:
Title:
Crystal structure of the LH1-RC complex from Thermochromatium tepidum in C2 form
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2013-11-22
Release Date:
2014-04-09
Method Details:
Experimental Method:
Resolution:
3.01 Å
R-Value Free:
0.33
R-Value Work:
0.31
R-Value Observed:
0.31
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:LH1 alpha polypeptide
Chain IDs:E (auth: A), G (auth: D), I (auth: F), K (auth: I), M (auth: K), O, Q, S, U, W, Y, AA (auth: 1), CA (auth: 3), EA (auth: 5), GA (auth: 7), IA (auth: 9)
Chain Length:61
Number of Molecules:16
Biological Source:Thermochromatium tepidum
Polymer Type:polypeptide(L)
Description:LH1 beta polypeptide
Chain IDs:F (auth: B), H (auth: E), J (auth: G), L (auth: J), N, P, R, T, V, X, Z, BA (auth: 2), DA (auth: 4), FA (auth: 6), HA (auth: 8), JA (auth: 0)
Chain Length:47
Number of Molecules:16
Biological Source:Thermochromatium tepidum
Polymer Type:polypeptide(L)
Description:Photosynthetic reaction center C subunit
Chain IDs:A (auth: C)
Chain Length:404
Number of Molecules:1
Biological Source:Thermochromatium tepidum
Polymer Type:polypeptide(L)
Description:Photosynthetic reaction center H subunit
Chain IDs:D (auth: H)
Chain Length:259
Number of Molecules:1
Biological Source:Thermochromatium tepidum
Polymer Type:polypeptide(L)
Description:Photosynthetic reaction center L subunit
Chain IDs:B (auth: L)
Chain Length:281
Number of Molecules:1
Biological Source:Thermochromatium tepidum
Polymer Type:polypeptide(L)
Description:Photosynthetic reaction center M subunit
Chain IDs:C (auth: M)
Chain Length:325
Number of Molecules:1
Biological Source:Thermochromatium tepidum
Primary Citation
Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom
Nature 508 228 232 (2014)
PMID: 24670637 DOI: 10.1038/nature13197

Abstact

The light-harvesting core antenna (LH1) and the reaction centre (RC) of purple photosynthetic bacteria form a supramolecular complex (LH1-RC) to use sunlight energy in a highly efficient manner. Here we report the first near-atomic structure, to our knowledge, of a LH1-RC complex, namely that of a Ca(2+)-bound complex from Thermochromatium tepidum, which reveals detailed information on the arrangement and interactions of the protein subunits and the cofactors. The RC is surrounded by 16 heterodimers of the LH1 αβ-subunit that form a completely closed structure. The Ca(2+) ions are located at the periplasmic side of LH1. Thirty-two bacteriochlorophyll and 16 spirilloxanthin molecules in the LH1 ring form an elliptical assembly. The geometries of the pigment assembly involved in the absorption characteristics of the bacteriochlorophyll in LH1 and excitation energy transfer among the pigments are reported. In addition, possible ubiquinone channels in the closed LH1 complex are proposed based on the atomic structure.

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