3WLA image
Deposition Date 2013-11-08
Release Date 2014-09-24
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3WLA
Keywords:
Title:
Crystal Structure of sOPH Native
Biological Source:
Source Organism:
Sphingopyxis (Taxon ID: 292913)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oxidized polyvinyl alcohol hydrolase
Gene (Uniprot):oph
Chain IDs:A, B, C
Chain Length:336
Number of Molecules:3
Biological Source:Sphingopyxis
Ligand Molecules
Primary Citation
Structural insights into enzymatic degradation of oxidized polyvinyl alcohol
Chembiochem 15 1882 1886 (2014)
PMID: 25044912 DOI: 10.1002/cbic.201402166

Abstact

The ever-increasing production and use of polyvinyl alcohol (PVA) threaten our environment. Yet PVA can be assimilated by microbes in two steps: oxidation and cleavage. Here we report novel α/β-hydrolase structures of oxidized PVA hydrolase (OPH) from two known PVA-degrading organisms, Sphingopyxis sp. 113P3 and Pseudomonas sp. VM15C, including complexes with substrate analogues, acetylacetone and caprylate. The active site is covered by a lid-like β-ribbon. Unlike other esterase and amidase, OPH is unique in cleaving the CC bond of β-diketone, although it has a catalytic triad similar to that of most α/β-hydrolases. Analysis of the crystal structures suggests a double-oxyanion-hole mechanism, previously only found in thiolase cleaving β-ketoacyl-CoA. Three mutations in the lid region showed enhanced activity, with potential in industrial applications.

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Primary Citation of related structures
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