3WJM image
Deposition Date 2013-10-11
Release Date 2014-09-24
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3WJM
Title:
Crystal structure of Bombyx mori Sp2/Sp3 heterohexamer
Biological Source:
Source Organism:
Bombyx mori (Taxon ID: 7091)
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Arylphorin
Gene (Uniprot):733005
Chain IDs:A, E, F
Chain Length:703
Number of Molecules:3
Biological Source:Bombyx mori
Polymer Type:polypeptide(L)
Molecule:Silkworm storage protein
Gene (Uniprot):sp3
Chain IDs:B, C, D
Chain Length:696
Number of Molecules:3
Biological Source:Bombyx mori
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN E ASN GLYCOSYLATION SITE
Primary Citation
Crystal structure of Bombyx mori arylphorins reveals a 3:3 heterohexamer with multiple papain cleavage sites
Protein Sci. 23 735 746 (2014)
PMID: 24639361 DOI: 10.1002/pro.2457

Abstact

In holometabolous insects, the accumulation and utilization of storage proteins (SPs), including arylphorins and methionine-rich proteins, are critical for the insect metamorphosis. SPs function as amino acids reserves, which are synthesized in fat body, secreted into the larval hemolymph and taken up by fat body shortly before pupation. However, the detailed molecular mechanisms of digestion and utilization of SPs during development are largely unknown. Here, we report the crystal structure of Bombyx mori arylphorins at 2.8 Å, which displays a heterohexameric structural arrangement formed by trimerization of dimers comprising two structural similar arylphorins. Our limited proteolysis assay and microarray data strongly suggest that papain-like proteases are the major players for B. mori arylphorins digestion in vitro and in vivo. Consistent with the biochemical data, dozens of papain cleavage sites are mapped on the surface of the heterohexameric structure of B. mori arylphorins. Hence, our results provide the insightful information to understand the metamorphosis of holometabolous insects at molecular level.

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