3WI6 image
Deposition Date 2013-09-06
Release Date 2013-12-18
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3WI6
Title:
Crystal structure of MAPKAP Kinase-2 (MK2) in complex with non-selective inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.99 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
I 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MAP kinase-activated protein kinase 2
Gene (Uniprot):MAPKAPK2
Chain IDs:A, B, C, D, E, F
Chain Length:324
Number of Molecules:6
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of the beta-form of human MK2 in complex with the non-selective kinase inhibitor TEI-L03090
Acta Crystallogr.,Sect.F 69 1344 1348 (2013)
PMID: 24316826 DOI: 10.1107/S1744309113030534

Abstact

Mitogen-activated protein kinase-activated protein kinase 2 (MK2 or MAPKAP-K2), a serine/threonine kinase from the p38 mitogen-activated protein kinase signalling pathway, plays an important role in the production of TNF-α and other cytokines. In a previous report, it was shown that MK2 in complex with the selective inhibitor TEI-I01800 adopts an α-helical glycine-rich loop that is induced by the stable nonplanar conformer of TEI-I01800. To understand the mechanism of the structural change, the structure of MK2 bound to TEI-L03090, which lacks the key substituent found in TEI-I01800, was determined. MK2-TEI-L03090 has a β-sheet glycine-rich loop in common with other kinases, as predicted. This result suggests that a small compound can induce a drastic conformational change in the target protein structure and can be used to design potent and selective inhibitors.

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Protein

Chemical

Disease

Primary Citation of related structures
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