3WHM image
Deposition Date 2013-08-27
Release Date 2014-10-15
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3WHM
Title:
Structure of Hemoglobin Complex with 18-crown-6
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit alpha
Gene (Uniprot):HBA1, HBA2
Chain IDs:A, C (auth: E)
Chain Length:141
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit beta
Gene (Uniprot):HBB
Chain IDs:B, D (auth: F)
Chain Length:146
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Crowning proteins: modulating the protein surface properties using crown ethers.
Angew.Chem.Int.Ed.Engl. 53 13054 13058 (2014)
PMID: 25287606 DOI: 10.1002/anie.201405664

Abstact

Crown ethers are small, cyclic polyethers that have found wide-spread use in phase-transfer catalysis and, to a certain degree, in protein chemistry. Crown ethers readily bind metallic and organic cations, including positively charged amino acid side chains. We elucidated the crystal structures of several protein-crown ether co-crystals grown in the presence of 18-crown-6. We then employed biophysical methods and molecular dynamics simulations to compare these complexes with the corresponding apoproteins and with similar complexes with ring-shaped low-molecular-weight polyethylene glycols. Our studies show that crown ethers can modify protein surface behavior dramatically by stabilizing either intra- or intermolecular interactions. Consequently, we propose that crown ethers can be used to modulate a wide variety of protein surface behaviors, such as oligomerization, domain-domain interactions, stabilization in organic solvents, and crystallization.

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