3WFZ image
Deposition Date 2013-07-25
Release Date 2013-10-09
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3WFZ
Keywords:
Title:
Crystal structure of Galacto-N-Biose/Lacto-N-Biose I Phosphorylase C236Y Mutant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lacto-N-biose phosphorylase
Gene (Uniprot):lnpA
Mutations:C236Y
Chain IDs:A, B, C, D
Chain Length:759
Number of Molecules:4
Biological Source:Bifidobacterium longum
Ligand Molecules
Primary Citation
Directed evolution to enhance thermostability of galacto-N-biose/lacto-N-biose I phosphorylase.
Protein Eng.Des.Sel. 26 755 761 (2013)
PMID: 24065834 DOI: 10.1093/protein/gzt049

Abstact

Galacto-N-biose/lacto-N-biose I phosphorylase (GLNBP) is the key enzyme in the enzymatic production of lacto-N-biose I. For the purpose of industrial use, we improved the thermostability of GLNBP by evolutionary engineering in which five substitutions in the amino acid sequence were selected from a random mutagenesis GLNBP library constructed using error-prone polymerase chain reaction. Among them, C236Y and D576V mutants showed considerably improved thermostability. Structural analysis of C236Y revealed that the hydroxyl group of Tyr236 forms a hydrogen bond with the carboxyl group of E319. The C236Y and D576V mutations together contributed to the thermostability. The C236Y/D576V mutant exhibited 20°C higher thermostability than the wild type.

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Primary Citation of related structures