3WFS image
Deposition Date 2013-07-23
Release Date 2014-01-01
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3WFS
Keywords:
Title:
tRNA processing enzyme complex 3
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.31 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:RNA (74-MER)
Chain IDs:A, B
Chain Length:74
Number of Molecules:2
Biological Source:Thermotoga maritima MSB8
Polymer Type:polypeptide(L)
Molecule:Poly A polymerase
Gene (Uniprot):aq_2158
Chain IDs:C, D
Chain Length:512
Number of Molecules:2
Biological Source:synthetic construct, Aquifex aeolicus (strain VF5)
Ligand Molecules
Primary Citation
Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase
Structure 22 315 325 (2014)
PMID: 24389024 DOI: 10.1016/j.str.2013.12.002

Abstact

The 3'-terminal CCA (CCA-3' at positions 74-76) of tRNA is synthesized by CCA-adding enzyme using CTP and ATP as substrates, without a nucleic acid template. In Aquifex aeolicus, CC-adding and A-adding enzymes collaboratively synthesize the CCA-3'. The mechanism of CCA-3' synthesis by these two enzymes remained obscure. We now present crystal structures representing CC addition onto tRNA by A. aeolicus CC-adding enzyme. After C₇₄ addition in an enclosed active pocket and pyrophosphate release, the tRNA translocates and rotates relative to the enzyme, and C₇₅ addition occurs in the same active pocket as C₇₄ addition. At both the C₇₄-adding and C₇₅-adding stages, CTP is selected by Watson-Crick-like hydrogen bonds between the cytosine of CTP and conserved Asp and Arg residues in the pocket. After C₇₄C₇₅ addition and pyrophosphate release, the tRNA translocates further and drops off the enzyme, and the CC-adding enzyme terminates RNA polymerization.

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Primary Citation of related structures