3WEU image
Deposition Date 2013-07-12
Release Date 2013-09-04
Last Version Date 2025-03-26
Entry Detail
PDB ID:
3WEU
Keywords:
Title:
Crystal structure of the L-Lys epsilon-oxidase from Marinomonas mediterranea
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:L-lysine 6-oxidase
Gene (Uniprot):lodA
Chain IDs:A, B
Chain Length:726
Number of Molecules:2
Biological Source:Marinomonas mediterranea
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSD A CYS 3-SULFINOALANINE
TRQ A TRP ?
Primary Citation
X-Ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine {varepsilon}-oxidase from Marinomonas mediterranea
J.Biochem. 154 233 236 (2013)
PMID: 23908359 DOI: 10.1093/jb/mvt070

Abstact

We have determined the x-ray crystal structure of L-lysine ε-oxidase from Marinomonas mediterranea in its native and L-lysine-complex forms at 1.94- and 1.99-Å resolution, respectively. In the native enzyme, electron densities clearly indicate the presence of cysteine tryptophylquinone (CTQ) previously identified in quinohemoprotein amine dehydrogenase. In the L-lysine-complex, an electron density corresponding to the bound L-lysine shows that its ε-amino group is attached to the C6 carbonyl group of CTQ, suggesting the formation of a Schiff-base intermediate. Collectively, the present crystal structure provides the first example of an enzyme employing a tryptophylquinone cofactor in an amine oxidase.

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Primary Citation of related structures