3WDP image
Deposition Date 2013-06-19
Release Date 2014-03-12
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3WDP
Keywords:
Title:
Structural analysis of a beta-glucosidase mutant derived from a hyperthermophilic tetrameric structure
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-glucosidase
Gene (Uniprot):celB
Mutations:R170A, R220A, Y227F
Chain IDs:A (auth: P), B (auth: Q), C (auth: R), D (auth: S)
Chain Length:473
Number of Molecules:4
Biological Source:Pyrococcus furiosus
Primary Citation
Structural analysis of beta-glucosidase mutants derived from a hyperthermophilic tetrameric structure.
Acta Crystallogr.,Sect.D 70 877 888 (2014)
PMID: 24598756 DOI: 10.1107/S1399004713032276

Abstact

β-Glucosidase from Pyrococcus furiosus (BGLPf) is a hyperthermophilic tetrameric enzyme which can degrade cellooligosaccharides to glucose under hyperthermophilic conditions and thus holds promise for the saccharification of lignocellulosic biomass at high temperature. Prior to the production of large amounts of this enzyme, detailed information regarding the oligomeric structure of the enzyme is required. Several crystals of BGLPf have been prepared over the past ten years, but its crystal structure had not been solved until recently. In 2011, the first crystal structure of BGLPf was solved and a model was constructed at somewhat low resolution (2.35 Å). In order to obtain more detailed structural data on BGLPf, the relationship between its tetrameric structure and the quality of the crystal was re-examined. A dimeric form of BGLPf was constructed and its crystal structure was solved at a resolution of 1.70 Å using protein-engineering methods. Furthermore, using the high-resolution crystal structural data for the dimeric form, a monomeric form of BGLPf was constructed which retained the intrinsic activity of the tetrameric form. The thermostability of BGLPf is affected by its oligomeric structure. Here, the biophysical and biochemical properties of engineered dimeric and monomeric BGLPfs are reported, which are promising prototype models to apply to the saccharification reaction. Furthermore, details regarding the oligomeric structures of BGLPf and the reasons why the mutations yielded improved crystal structures are discussed.

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