3WC3 image
Deposition Date 2013-05-24
Release Date 2013-10-30
Last Version Date 2024-10-09
Entry Detail
PDB ID:
3WC3
Keywords:
Title:
Crystal structure of endo-1,4-beta-glucanase from Eisenia fetida
Biological Source:
Source Organism:
Eisenia fetida (Taxon ID: 6396)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 32 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Endo-1, 4-beta-glucanase
Gene (Uniprot):EF-EG2
Chain IDs:A
Chain Length:460
Number of Molecules:1
Biological Source:Eisenia fetida
Primary Citation
Crystal structure of endo-1,4-beta-glucanase from Eisenia fetida
J.SYNCHROTRON RADIAT. 20 884 889 (2013)
PMID: 24121333 DOI: 10.1107/S0909049513021110

Abstact

The saccharification process is essential for bioethanol production from woody biomass including celluloses. Cold-adapted cellulase, which has sufficient activity at low temperature (<293 K), is capable of reducing heating costs during the saccharification process and is suitable for simultaneous saccharification and fermentation. Endo-1,4-β-glucanase from the earthworm Eisenia fetida (EF-EG2) belonging to glycoside hydrolase family 9 has been shown to have the highest activity at 313 K, and also retained a comparatively high activity at 283 K. The recombinant EF-EG2 was purified expressed in Pichia pastoris, and then grew needle-shaped crystals with dimensions of 0.02 × 0.02 × 1 mm. The crystals belonged to the space group P3221 with unit-cell parameters of a = b = 136 Å, c = 55.0 Å. The final model of EF-EG2, including 435 residues, two ions, seven crystallization reagents and 696 waters, was refined to a crystallographic R-factor of 14.7% (free R-factor of 16.8%) to 1.5 Å resolution. The overall structure of EF-EG2 has an (α/α)6 barrel fold which contains a putative active-site cleft and a negatively charged surface. This structural information helps us understand the catalytic and cold adaptation mechanisms of EF-EG2.

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Primary Citation of related structures
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