3W9R image
Deposition Date 2013-04-13
Release Date 2014-04-09
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3W9R
Title:
Crystal structure of the high-affinity abscisic acid receptor PYL9/RCAR9 bound to ABA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Abscisic acid receptor PYL9
Gene (Uniprot):PYL9
Chain IDs:A
Chain Length:189
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Primary Citation
Mechanism of high-affinity abscisic acid binding to PYL9/RCAR1.
Genes Cells 19 386 404 (2014)
PMID: 24645846 DOI: 10.1111/gtc.12140

Abstact

Arabidopsis receptors of abscisic acid (ABA), the key plant hormone for adaptation to water stress, comprise 14 PYR/PYLs/RCARs proteins classified into three subfamilies I, II, and III, which suggests functional differentiation. Although their monomer-dimer equilibria may be correlated with differences in their ABA-binding affinities, how the dimerization decreases the affinity is unclear. Comparative structural and binding studies between PYL9, which is a representative of high-affinity subfamily I, and low-affinity members of subfamily III reveals that the nonpolar triplet (Ile110, Val162, and Leu165) and Pro64 contribute to enhance ABA-binding affinity by inducing a shift of the ABA carboxyl group to form additional direct hydrogen bonds with conserved Asn169. Our mutation studies of PYL1 successfully produced a monomeric mutant PYL1 exhibiting low ABA affinity and also a dimeric mutant PYL1 exhibiting high ABA-binding affinity, suggesting that dimer formation of ABA receptors is not essential for their low ABA-binding affinity. Our study contributes toward establishing the structural basis for the higher ABA-binding affinity of the subfamily receptors and provides a clue for understanding the broad spectrum of hormone actions in plants manifested by the different hormone-binding affinity of multiple receptors.

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