3W8Z image
Deposition Date 2013-03-22
Release Date 2013-10-30
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3W8Z
Keywords:
Title:
The complex structure of EncM with hydroxytetraketide
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative FAD-dependent oxygenase EncM
Gene (Uniprot):encM
Chain IDs:A, B
Chain Length:468
Number of Molecules:2
Biological Source:Streptomyces maritimus
Primary Citation
Flavin-mediated dual oxidation controls an enzymatic Favorskii-type rearrangement.
Nature 503 552 556 (2013)
PMID: 24162851 DOI: 10.1038/nature12643

Abstact

Flavoproteins catalyse a diversity of fundamental redox reactions and are one of the most studied enzyme families. As monooxygenases, they are universally thought to control oxygenation by means of a peroxyflavin species that transfers a single atom of molecular oxygen to an organic substrate. Here we report that the bacterial flavoenzyme EncM catalyses the peroxyflavin-independent oxygenation-dehydrogenation dual oxidation of a highly reactive poly(β-carbonyl). The crystal structure of EncM with bound substrate mimics and isotope labelling studies reveal previously unknown flavin redox biochemistry. We show that EncM maintains an unexpected stable flavin-oxygenating species, proposed to be a flavin-N5-oxide, to promote substrate oxidation and trigger a rare Favorskii-type rearrangement that is central to the biosynthesis of the antibiotic enterocin. This work provides new insight into the fine-tuning of the flavin cofactor in offsetting the innate reactivity of a polyketide substrate to direct its efficient electrocyclization.

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