3W5E image
Entry Detail
PDB ID:
3W5E
Title:
Crystal structure of phosphodiesterase 4B in complex with compound 31e
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2013-01-28
Release Date:
2013-05-29
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.26
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:cAMP-specific 3',5'-cyclic phosphodiesterase 4B
Chain IDs:A, B
Chain Length:377
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Identification of the fused bicyclic 4-amino-2-phenylpyrimidine derivatives as novel and potent PDE4 inhibitors
Bioorg.Med.Chem.Lett. 23 3325 3328 (2013)
PMID: 23602400 DOI: 10.1016/j.bmcl.2013.03.104

Abstact

2-Phenyl-4-piperidinyl-6,7-dihydrothieno[3,4-d]pyrimidine derivative (2) was found to be a new PDE4 inhibitor with moderate PDE4B activity (IC50=150 nM). A number of derivatives with a variety of 4-amino substituents and fused bicyclic pyrimidines were synthesized. Among these, 5,5-dioxo-7,8-dihydro-6H-thiopyrano[3,2-d]pyrimidine derivative (18) showed potent PDE4B inhibitory activity (IC50=25 nM). Finally, N-propylacetamide derivative (31b) was determined as a potent inhibitor for both PDE4B (IC50=7.5 nM) and TNF-α production in mouse splenocytes (IC50=9.8 nM) and showed good in vivo anti-inflammatory activity in the LPS-induced lung inflammation model in mice (ID50=18 mg/kg). The binding mode of the new inhibitor (31e) in the catalytic site of PDE4B is presented based on an X-ray crystal structure of the ligand-enzyme complex.

Legend

Protein

Chemical

Disease

Primary Citation of related structures