3W41 image
Deposition Date 2013-01-04
Release Date 2014-01-22
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3W41
Keywords:
Title:
Crystal structure of RsbX in complex with magnesium in space group P21
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.42 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phosphoserine phosphatase RsbX
Gene (Uniprot):rsbX
Chain IDs:A
Chain Length:199
Number of Molecules:1
Biological Source:Bacillus subtilis
Ligand Molecules
Primary Citation
Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis
Acta Crystallogr.,Sect.D 71 1392 1399 (2015)
PMID: 26057679 DOI: 10.1107/S1399004715007166

Abstact

In the general stress response of Bacillus subtilis, which is governed by the sigma factor σ(B), stress signalling is relayed by a cascade of Rsb proteins that regulate σ(B) activity. RsbX, a PPM II phosphatase, halts the response by dephosphorylating the stressosome composed of RsbR and RsbS. The crystal structure of RsbX reveals a reorganization of the catalytic centre, with the second Mn(2+) ion uniquely coordinated by Gly47 O from the β4-α1 loop instead of a water molecule as in PPM I phosphatases. An extra helical turn of α1 tilts the loop towards the metal-binding site, and the β2-β3 loop swings outwards to accommodate this tilting. The residues critical for this defining feature of the PPM II phosphatases are highly conserved. Formation of the catalytic centre is metal-specific, as crystallization with Mg(2+) ions resulted in a shift of the β4-α1 loop that led to loss of the second ion. RsbX also lacks the flap subdomain characteristic of PPM I phosphatases. On the basis of a stressosome model, the activity of RsbX towards RsbR-P and RsbS-P may be influenced by the different accessibilities of their phosphorylation sites.

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Primary Citation of related structures