3W31 image
Deposition Date 2012-12-07
Release Date 2013-03-27
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3W31
Keywords:
Title:
Structual basis for the recognition of Ubc13 by the Shigella flexneri effector OspI
Biological Source:
Source Organism:
Shigella flexneri (Taxon ID: 623)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.96 Å
R-Value Free:
0.28
R-Value Work:
0.24
Space Group:
P 3 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ORF169b
Gene (Uniprot):ORF169b
Mutations:C62A
Chain IDs:A
Chain Length:220
Number of Molecules:1
Biological Source:Shigella flexneri
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 N
Gene (Uniprot):UBE2N
Chain IDs:B
Chain Length:155
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis for the recognition of Ubc13 by the Shigella flexneri effector OspI.
J.Mol.Biol. 425 2623 2631 (2013)
PMID: 23542009 DOI: 10.1016/j.jmb.2013.02.037

Abstact

Ubc13 is a ubiquitin-conjugating enzyme that plays a key role in the nuclear factor-κB signal transduction pathway in human diseases. The Shigella flexneri effector OspI affects inflammatory responses by catalyzing the deamidation of a specific glutamine residue at position 100 in Ubc13 during infection. This modification prevents the activation of the TNF (tumor necrosis factor) receptor-associated factor 6, leading to modulation of the diacylglycerol-CBM (CARD-Bcl10-Malt1) complex-TNF receptor-associated factor 6-nuclear factor-κB signaling pathway. To elucidate the structural basis of OspI function, we determined the crystal structures of the catalytically inert OspI C62A mutant and its complex with Ubc13 at resolutions of 3.0 and 2.96Å, respectively. The structure of the OspI-Ubc13 complex revealed that the interacting surfaces between OspI and Ubc13 are a hydrophobic surface and a complementary charged surface. Furthermore, we predict that the complementary charged surface of OspI plays a key role in substrate specificity determination.

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Primary Citation of related structures