3VW9 image
Entry Detail
PDB ID:
3VW9
Title:
Human Glyoxalase I with an N-hydroxypyridone inhibitor
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2012-08-10
Release Date:
2012-12-12
Method Details:
Experimental Method:
Resolution:
1.47 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Lactoylglutathione lyase
Chain IDs:A, B
Chain Length:187
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Design and evaluation of azaindole-substituted N-hydroxypyridones as glyoxalase I inhibitors
Bioorg.Med.Chem.Lett. 22 7486 7489 (2012)
PMID: 23122816 DOI: 10.1016/j.bmcl.2012.10.045

Abstact

We conducted a high throughput screening for glyoxalase I (GLO1) inhibitors and identified 4,6-diphenyl-N-hydroxypyridone as a lead compound. Using a binding model of the lead and public X-ray coordinates of GLO1 enzymes complexed with glutathione analogues, we designed 4-(7-azaindole)-substituted 6-phenyl-N-hydroxypyridones. 7-Azaindole's 7-nitrogen was expected to interact with a water network, resulting in an interaction with the protein. We validated this inhibitor design by comparing its structure-activity relationship (SAR) with that of corresponding indole derivatives, by analyzing the binding mode with X-ray crystallography and by evaluating its thermodynamic binding parameters.

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