3VW5 image
Deposition Date 2012-08-02
Release Date 2013-06-26
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3VW5
Keywords:
Title:
Crystal structure of sugar epimerase from ruminal bacterium
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cellobiose 2-epimerase
Mutagens:G38E, P138L
Chain IDs:A, B, C
Chain Length:389
Number of Molecules:3
Biological Source:Ruminococcus albus
Primary Citation
Crystal structure of Ruminococcus albus cellobiose 2-epimerase: structural insights into epimerization of unmodified sugar
Febs Lett. 587 840 846 (2013)
PMID: 23462136 DOI: 10.1016/j.febslet.2013.02.007

Abstact

Enzymatic epimerization is an important modification for carbohydrates to acquire diverse functions attributable to their stereoisomers. Cellobiose 2-epimerase (CE) catalyzes interconversion between d-glucose and d-mannose residues at the reducing end of β-1,4-linked oligosaccharides. Here, we solved the structure of Ruminococcus albus CE (RaCE). The structure of RaCE showed strong similarity to those of N-acetyl-D-glucosamine 2-epimerase and aldose-ketose isomerase YihS with a high degree of conservation of residues around the catalytic center, although sequence identity between them is low. Based on structural comparison, we found that His184 is required for RaCE activity as the third histidine added to two essential histidines in other sugar epimerases/isomerases. This finding was confirmed by mutagenesis, suggesting a new catalytic mechanism for CE involving three histidines.

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Primary Citation of related structures