3VU5 image
Deposition Date 2012-06-19
Release Date 2012-12-19
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3VU5
Title:
Short peptide HIV entry Inhibitor SC22EK
Biological Source:
Source Organism:
(Taxon ID: )Human immunodeficiency virus 1 (Taxon ID: 11676)
Method Details:
Experimental Method:
Resolution:
2.09 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Transmembrane protein gp41
Gene (Uniprot):env
Chain IDs:A
Chain Length:39
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:SC22
Chain IDs:B
Chain Length:23
Number of Molecules:1
Biological Source:
Primary Citation
Short-peptide fusion inhibitors with high potency against wild-type and enfuvirtide-resistant HIV-1
Faseb J. 27 1203 1213 (2013)
PMID: 23233535 DOI: 10.1096/fj.12-222547

Abstact

Peptides derived from the C-terminal heptad repeat (C peptides) of HIV-1 gp41 are potent inhibitors against virus entry. However, development of a short C peptide possessing high anti-HIV potency is considered a daunting challenge. We recently discovered that the residues Met626 and Thr627 preceding the pocket-binding domain of the C peptide adopt a unique M-T hook structure that is crucial for the design of HIV-1 fusion inhibitors. In this study, we first presented a proof-of-concept prototype that the M-T hook residues can dramatically improve the antiviral activity and thermostability of a short C peptide. We then generated a 24-mer peptide termed MT-SC22EK by incorporating the M-T hook structure to the N terminus of the poorly active short C peptide SC22EK. Amazingly, MT-SC22EK inhibited HIV-1-mediated cell fusion and infection at a level comparable to C34, T1249, SC29EK, and sifuvirtide, and it was highly active against diverse HIV-1 subtypes and variants, including those T20 (enfuvirtide) and SC29EK-resistant viruses. The high-resolution crystal structure of MT-SC22EK reveals the N-terminal M-T hook conformation folded by incorporated Met626 and Thr627 and identifies the C-terminal boundary critical for the anti-HIV activity. Collectively, our studies provide new insights into the mechanisms of HIV-1 fusion and its inhibition.

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