3VTT image
Entry Detail
PDB ID:
3VTT
Title:
High Resolution crystal structure of Dengue 3 Envelope protein domain III (ED3)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2012-06-07
Release Date:
2012-12-26
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Envelope protein E
Chain IDs:A, B
Chain Length:107
Number of Molecules:2
Biological Source:Dengue virus type 3
Ligand Molecules
Primary Citation
High resolution crystal structure of dengue-3 envelope protein domain III suggests possible molecular mechanisms for serospecific antibody recognition
Proteins 81 1090 1095 (2013)
PMID: 23239402 DOI: 10.1002/prot.24237

Abstact

Dengue viruses are classified into four serotypes. Here, we report a 1.7 Å crystal structure of a recombinant dengue-3 envelope protein domain III (ED3), which contains most of the putative epitopes. Although the fold was well conserved, we found that a local backbone deformation in the first β-strand, which contains the putative epitope-1, occurred upon domain isolation. Furthermore, a comparison with dengue-2 ED3 indicated a large structural change by as much as 4.0 Å at Asp(662), located in epitope-2. These minute structural and surface properties changes observed in the high resolution ED3 structure represent potential determinants for serospecificity and epitope recognition by antibodies.

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Primary Citation of related structures