3VPC image
Deposition Date 2012-02-29
Release Date 2013-02-27
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3VPC
Keywords:
Title:
ArgX from Sulfolobus tokodaii complexed with ADP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.87 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative acetylornithine deacetylase
Gene (Uniprot):argX
Chain IDs:A, B, C, D
Chain Length:282
Number of Molecules:4
Biological Source:Sulfolobus tokodaii
Ligand Molecules
Primary Citation
Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus.
Nat.Chem.Biol. 9 277 283 (2013)
PMID: 23434852 DOI: 10.1038/nchembio.1200

Abstact

LysW has been identified as a carrier protein in the lysine biosynthetic pathway that is active through the conversion of α-aminoadipate (AAA) to lysine. In this study, we found that the hyperthermophilic archaeon, Sulfolobus acidocaldarius, not only biosynthesizes lysine through LysW-mediated protection of AAA but also uses LysW to protect the amino group of glutamate in arginine biosynthesis. In this archaeon, after LysW modification, AAA and glutamate are converted to lysine and ornithine, respectively, by a single set of enzymes with dual functions. The crystal structure of ArgX, the enzyme responsible for modification and protection of the amino moiety of glutamate with LysW, was determined in complex with LysW. Structural comparison and enzymatic characterization using Sulfolobus LysX, Sulfolobus ArgX and Thermus LysX identify the amino acid motif responsible for substrate discrimination between AAA and glutamate. Phylogenetic analysis reveals that gene duplication events at different stages of evolution led to ArgX and LysX.

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Primary Citation of related structures