3VM4 image
Deposition Date 2011-12-08
Release Date 2012-05-09
Last Version Date 2023-11-08
Entry Detail
PDB ID:
3VM4
Keywords:
Title:
Cytochrome P450SP alpha (CYP152B1) in complex with (R)-ibuprophen
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.94 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fatty acid alpha-hydroxylase
Gene (Uniprot):I6G38_20980
Chain IDs:A
Chain Length:407
Number of Molecules:1
Biological Source:Sphingomonas paucimobilis
Primary Citation
Chiral-substrate-assisted stereoselective epoxidation catalyzed by H2O2-dependent cytochrome P450SP alpha
Chem Asian J 7 2286 2293 (2012)
PMID: 22700535 DOI: 10.1002/asia.201200250

Abstact

The stereoselective epoxidation of styrene was catalyzed by H(2) O(2) -dependent cytochrome P450(SPα) in the presence of carboxylic acids as decoy molecules. The stereoselectivity of styrene oxide could be altered by the nature of the decoy molecules. In particular, the chirality at the α-positions of the decoy molecules induced a clear difference in the chirality of the product: (R)-ibuprofen enhanced the formation of (S)-styrene oxide, whereas (S)-ibuprofen preferentially afforded (R)-styrene oxide. The crystal structure of an (R)-ibuprofen-bound cytochrome P450(SPα) (resolution 1.9 Å) revealed that the carboxylate group of (R)-ibuprofen served as an acid-base catalyst to initiate the epoxidation. A docking simulation of the binding of styrene in the active site of the (R)-ibuprofen-bound form suggested that the orientation of the vinyl group of styrene in the active site agreed with the formation of (S)-styrene oxide.

Legend

Protein

Chemical

Disease

Primary Citation of related structures