3VK9 image
Deposition Date 2011-11-10
Release Date 2012-10-03
Last Version Date 2024-03-20
Entry Detail
PDB ID:
3VK9
Keywords:
Title:
Crystal structure of delta-class glutathione transferase from silkmoth
Biological Source:
Source Organism:
Bombyx mori (Taxon ID: 7091)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glutathione S-transferase delta
Gene (Uniprot):GST delta
Chain IDs:A, B, C, D
Chain Length:216
Number of Molecules:4
Biological Source:Bombyx mori
Ligand Molecules
Primary Citation
Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase
Biochim.Biophys.Acta 1820 1469 1474 (2012)
PMID: 22579926 DOI: 10.1016/j.bbagen.2012.04.022

Abstact

BACKGROUND Glutathione transferase (GST) catalyzes glutathione conjugation, a major detoxification pathway for xenobiotics and endogenous substances. Here, we determined the crystal structure of a Delta-class GST from Bombyx mori (bmGSTD) to examine its catalytic residues. METHODS The three-dimensional structure of bmGSTD was resolved by the molecular replacement method and refined to a resolution of 2.0Å. RESULTS Structural alignment with a Delta-class GST of Anopheles gambiae indicated that bmGSTD contains 2 distinct domains (an N-terminal domain and a C-terminal domain) connected by a linker. The bound glutathione localized at the N-terminal domain. Putative catalytic residues were changed to alanine by site-directed mutagenesis, and the resulting mutants were characterized in terms of catalytic activity using glutathione and 1-chloro-2,4-dinitrobenzene, a synthetic substrate of GST. Kinetic analysis of bmGSTD mutants indicated that Ser11, Gln51, His52, Ser67, and Arg68 are important for enzyme function. GENERAL SIGNIFICANCE These results provide structural insights into the catalysis of glutathione conjugation in B. mori by bmGSTD.

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