3VD8 image
Deposition Date 2012-01-04
Release Date 2013-01-16
Last Version Date 2023-09-13
Entry Detail
PDB ID:
3VD8
Title:
Crystal structure of human AIM2 PYD domain with MBP fusion
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 83334)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.07 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Maltose-binding periplasmic protein, Interferon-inducible protein AIM2
Gene (Uniprot):AIM2, malE
Mutagens:D82A, K83A, E172A, N173A, K239A
Chain IDs:A
Chain Length:489
Number of Molecules:1
Biological Source:Escherichia coli, Homo sapiens
Peptide-like Molecules
PRD_900010
Primary Citation
Structure of the Absent in Melanoma 2 (AIM2) Pyrin Domain Provides Insights into the Mechanisms of AIM2 Autoinhibition and Inflammasome Assembly.
J.Biol.Chem. 288 13225 13235 (2013)
PMID: 23530044 DOI: 10.1074/jbc.M113.468033

Abstact

BACKGROUND AIM2 binds dsDNA and associates with ASC through their PYDs to form an inflammasome. RESULTS The AIM2 PYD structure illustrates distinct charge distribution and a unique hydrophobic patch. CONCLUSION The AIM2 PYD may bind the ASC PYD and the AIM2 HIN domain through overlapping surface. SIGNIFICANCE These findings provide insights into the mechanisms of AIM2 autoinhibition and inflammasome assembly. Absent in melanoma 2 (AIM2) is a cytosolic double-stranded (dsDNA) sensor essential for innate immune responses against DNA viruses and bacteria such as Francisella and Listeria. Upon dsDNA engagement, the AIM2 amino-terminal pyrin domain (PYD) is responsible for downstream signaling to the adapter protein apoptosis-associated speck-like protein containing a caspase recruitment domain (ASC) through homotypic PYD-PYD interactions and the assembly of an inflammasome. Toward a better understanding of the AIM2 signaling mechanism, we determined the crystal structure of the human AIM2 PYD. The structure reveals a death domain fold with a short α3 helix that is buttressed by a highly conserved lysine residue at the α2 helix, which may stabilize the α3 helix for potential interaction with partner domains. The surface of the AIM2 PYD exhibits distinct charge distribution with highly acidic α1-α2 helices and highly basic α5-α6 helices. A prominent solvent-exposed hydrophobic patch formed by residues Phe-27 and Phe-28 at the α2 helix resembles a similar surface involved in the death effector domain homotypic interactions. Docking studies suggest that the AIM2 PYD may bind the AIM2 hematopoietic interferon-inducible nuclear (HIN) domain or ASC PYD using overlapping surface near the α2 helix. This may ensure that AIM2 interacts with the downstream adapter ASC only upon release of the autoinhibition by the dsDNA ligand. Our work thus unveils novel structural features of the AIM2 PYD and provides insights into the potential mechanisms of the PYD-HIN and PYD-PYD interactions important for AIM2 autoinhibition and inflammasome assembly.

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Primary Citation of related structures
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