3VCL image
Entry Detail
PDB ID:
3VCL
Keywords:
Title:
Crystal Structure of HLA-B7 with the HCMV pp65 peptide RPHERNGFTVL
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2012-01-04
Release Date:
2012-11-21
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HLA class I histocompatibility antigen, B-7 alpha chain
Chain IDs:A
Chain Length:275
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Beta-2-microglobulin
Chain IDs:B
Chain Length:99
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:peptide from Tegument protein pp65
Chain IDs:C
Chain Length:11
Number of Molecules:1
Biological Source:Human herpesvirus 5
Primary Citation
The impact of a large and frequent deletion in the human TCR beta locus on antiviral immunity
J.Immunol. 188 2742 2748 (2012)
PMID: 22323539 DOI: 10.4049/jimmunol.1102675

Abstact

The TCR plays a critical role in recognizing intracellular pathogens and initiating pathways leading to the destruction of infected cells by the immune system. Although genetic variability is known to greatly impact on the human immune system and the outcome of infection, the influence of sequence variation leading to the inactivation or deletion of TCR gene segments is unknown. To investigate this issue, we examined the CD8(+) T cell response to an HLA-B7-restricted epitope ((265)RPHERNGFTVL(275)) from the pp65 Ag of human CMV that was highly biased and frequently dominated by a public TCR β-chain encoded by the variable gene segment TRBV4-3. Approximately 40% of humans lack T cells expressing TRBV4-3 because of a 21.5-kb insertion/deletion polymorphism, but these individuals remain responsive to this epitope, using a diverse T cell repertoire characterized by private TCR usage. Although most residues within the bulged 11-mer peptide were accessible for TCR contact, the public and private TCRs showed distinct patterns of sensitivity to amino acid substitution at different positions within the peptide, thereby suggesting that the repertoire diversity generated in the absence of the dominant public TRBV4-3(+) TCR could lead to better protection from viral escape mutation. Thus, variation in the size of the TRBV repertoire clearly contributes toward interindividual variability in immune responses and is presumably maintained in many ethnic groups to enhance the diversity of Ag-specific T cell responses.

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