3V5S image
Deposition Date 2011-12-16
Release Date 2012-02-22
Last Version Date 2023-09-13
Entry Detail
PDB ID:
3V5S
Keywords:
Title:
Structure of Sodium/Calcium Exchanger from Methanococcus jannaschii
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.30
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sodium/Calcium Exchanger
Gene (Uniprot):MJ0091
Mutations:L2V
Chain IDs:A
Chain Length:320
Number of Molecules:1
Biological Source:Methanocaldococcus jannaschii
Ligand Molecules
Primary Citation
Structural insight into the ion-exchange mechanism of the sodium/calcium exchanger.
Science 335 686 690 (2012)
PMID: 22323814 DOI: 10.1126/science.1215759

Abstact

Sodium/calcium (Na(+)/Ca(2+)) exchangers (NCX) are membrane transporters that play an essential role in maintaining the homeostasis of cytosolic Ca(2+) for cell signaling. We demonstrated the Na(+)/Ca(2+)-exchange function of an NCX from Methanococcus jannaschii (NCX_Mj) and report its 1.9 angstrom crystal structure in an outward-facing conformation. Containing 10 transmembrane helices, the two halves of NCX_Mj share a similar structure with opposite orientation. Four ion-binding sites cluster at the center of the protein: one specific for Ca(2+) and three that likely bind Na(+). Two passageways allow for Na(+) and Ca(2+) access to the central ion-binding sites from the extracellular side. Based on the symmetry of NCX_Mj and its ability to catalyze bidirectional ion-exchange reactions, we propose a structure model for the inward-facing NCX_Mj.

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