3V4V image
Entry Detail
PDB ID:
3V4V
Keywords:
Title:
crystal structure of a4b7 headpiece complexed with Fab ACT-1 and RO0505376
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-12-15
Release Date:
2012-01-11
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Integrin alpha-4
Mutations:R558A
Chain IDs:A, E (auth: C)
Chain Length:597
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Integrin beta-7
Chain IDs:B, F (auth: D)
Chain Length:503
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:MONOCLONAL ANTIBODY Act-1 HEAVY CHAIN
Chain IDs:C (auth: H), G (auth: M)
Chain Length:219
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:MONOCLONAL ANTIBODY Act-1 LIGHT CHAIN
Chain IDs:D (auth: L), H (auth: N)
Chain Length:217
Number of Molecules:2
Biological Source:Mus musculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN E ASN GLYCOSYLATION SITE
Primary Citation
Structural specializations of a4b7, an Integrin that Mediates Rolling Adhesion
J.Cell Biol. 196 131 146 (2012)
PMID: 22232704 DOI: 10.1083/jcb.201110023

Abstact

The lymphocyte homing receptor integrin α(4)β(7) is unusual for its ability to mediate both rolling and firm adhesion. α(4)β(1) and α(4)β(7) are targeted by therapeutics approved for multiple sclerosis and Crohn's disease. Here, we show by electron microscopy and crystallography how two therapeutic Fabs, a small molecule (RO0505376), and mucosal adhesion molecule-1 (MAdCAM-1) bind α(4)β(7). A long binding groove at the α(4)-β(7) interface for immunoglobulin superfamily domains differs in shape from integrin pockets that bind Arg-Gly-Asp motifs. RO0505376 mimics an Ile/Leu-Asp motif in α(4) ligands, and orients differently from Arg-Gly-Asp mimics. A novel auxiliary residue at the metal ion-dependent adhesion site in α(4)β(7) is essential for binding to MAdCAM-1 in Mg(2+) yet swings away when RO0505376 binds. A novel intermediate conformation of the α(4)β(7) headpiece binds MAdCAM-1 and supports rolling adhesion. Lack of induction of the open headpiece conformation by ligand binding enables rolling adhesion to persist until integrin activation is signaled.

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Primary Citation of related structures