3V4D image
Deposition Date 2011-12-14
Release Date 2012-01-04
Last Version Date 2024-10-09
Entry Detail
PDB ID:
3V4D
Keywords:
Title:
Crystal structure of RutC protein a member of the YjgF family from E.coli
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Aminoacrylate peracid reductase RutC
Gene (Uniprot):rutC
Chain IDs:A, B (auth: C), C (auth: F), D (auth: B), E (auth: D), F (auth: E)
Chain Length:134
Number of Molecules:6
Biological Source:Escherichia coli O6
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Structure of Escherichia coli RutC, a member of the YjgF family and putative aminoacrylate peracid reductase of the rut operon.
Acta Crystallogr.,Sect.F 68 1294 1299 (2012)
PMID: 23143235 DOI: 10.1107/S1744309112041796

Abstact

RutC is the third enzyme in the Escherichia coli rut pathway of uracil degradation. RutC belongs to the highly conserved YjgF family of proteins. The structure of the RutC protein was determined and refined to 1.95 Å resolution. The crystal belonged to space group P2(1)2(1)2 and contained six molecules in the asymmetric unit. The structure was solved by SAD phasing and was refined to an Rwork of 19.3% (Rfree=21.7%). The final model revealed that this protein has a Bacillus chorismate mutase-like fold and forms a homotrimer with a hydrophobic cavity in the center of the structure and ligand-binding clefts between two subunits. A likely function for RutC is the reduction of peroxy-aminoacrylate to aminoacrylate as a part of a detoxification process.

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