3V3B image
Deposition Date 2011-12-13
Release Date 2012-01-18
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3V3B
Title:
Structure of the Stapled p53 Peptide Bound to Mdm2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase Mdm2
Gene (Uniprot):MDM2
Chain IDs:A, B
Chain Length:88
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:SAH-p53-8 stapled-peptide
Chain IDs:C, D
Chain Length:16
Number of Molecules:2
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MK8 C LEU 2-METHYL-L-NORLEUCINE
Ligand Molecules
Peptide-like Molecules
PRD_000857
Primary Citation
Structure of the stapled p53 peptide bound to Mdm2.
J.Am.Chem.Soc. 134 103 106 (2012)
PMID: 22148351 DOI: 10.1021/ja2090367

Abstact

Mdm2 is a major negative regulator of the tumor suppressor p53 protein, a protein that plays a crucial role in maintaining genome integrity. Inactivation of p53 is the most prevalent defect in human cancers. Inhibitors of the Mdm2-p53 interaction that restore the functional p53 constitute potential nongenotoxic anticancer agents with a novel mode of action. We present here a 2.0 Å resolution structure of the Mdm2 protein with a bound stapled p53 peptide. Such peptides, which are conformationally and proteolytically stabilized with all-hydrocarbon staples, are an emerging class of biologics that are capable of disrupting protein-protein interactions and thus have broad therapeutic potential. The structure represents the first crystal structure of an i, i + 7 stapled peptide bound to its target and reveals that rather than acting solely as a passive conformational brace, a staple can intimately interact with the surface of a protein and augment the binding interface.

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Primary Citation of related structures