3UZS image
Deposition Date 2011-12-07
Release Date 2012-07-11
Last Version Date 2023-09-13
Entry Detail
PDB ID:
3UZS
Keywords:
Title:
Structure of the C13.28 RNA Aptamer Bound to the G Protein-Coupled Receptor Kinase 2-Heterotrimeric G Protein Beta 1 and Gamma 2 Subunit Complex
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.52 Å
R-Value Free:
0.26
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 3 1 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-adrenergic receptor kinase 1
Gene (Uniprot):GRK2
Mutations:S670A
Chain IDs:A
Chain Length:689
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Gene (Uniprot):GNB1
Chain IDs:B
Chain Length:340
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polyribonucleotide
Molecule:C13.28 RNA Aptamer
Chain IDs:D (auth: C)
Chain Length:28
Number of Molecules:1
Biological Source:
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Gene (Uniprot):GNG2
Chain IDs:C (auth: G)
Chain Length:74
Number of Molecules:1
Biological Source:Bos taurus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CMT C CYS O-METHYLCYSTEINE
Ligand Molecules
Primary Citation
Molecular mechanism for inhibition of g protein-coupled receptor kinase 2 by a selective RNA aptamer.
Structure 20 1300 1309 (2012)
PMID: 22727813 DOI: 10.1016/j.str.2012.05.002

Abstact

Cardiovascular homeostasis is maintained in part by the rapid desensitization of activated heptahelical receptors that have been phosphorylated by G protein-coupled receptor kinase 2 (GRK2). However, during chronic heart failure GRK2 is upregulated and believed to contribute to disease progression. We have determined crystallographic structures of GRK2 bound to an RNA aptamer that potently and selectively inhibits kinase activity. Key to the mechanism of inhibition is the positioning of an adenine nucleotide into the ATP-binding pocket and interactions with the basic αF-αG loop region of the GRK2 kinase domain. Constraints imposed on the RNA by the terminal stem of the aptamer also play a role. These results highlight how a high-affinity aptamer can be used to selectively trap a novel conformational state of a protein kinase.

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Disease

Primary Citation of related structures