3URG image
Deposition Date 2011-11-22
Release Date 2012-11-28
Last Version Date 2024-03-20
Entry Detail
PDB ID:
3URG
Title:
The crystal structure of Anabaena CcbP
Biological Source:
Source Organism:
Nostoc (Taxon ID: 103690)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alr1010 protein
Gene (Uniprot):ccbP
Chain IDs:A
Chain Length:146
Number of Molecules:1
Biological Source:Nostoc
Primary Citation
Ellman's reagent in promoting crystallization and structure determination of Anabaena CcbP.
Acta Crystallogr.,Sect.F 68 1409 1414 (2012)
PMID: 23143261 DOI: 10.1107/S1744309112034938

Abstact

Obtaining crystals presented a bottleneck in the structural study of Anabaena cyanobacterial Ca2+-binding protein (CcbP). In this report, the promoting effect of Ellman's reagent [5,5'-dithiobis(2-nitrobenzoic acid); DTNB] on the crystallization of CcbP is described. CcbP contains one free cysteine. A quick and simple oxidation reaction with DTNB blocked the free cysteine in purified CcbP and generated a homogenous monomeric protein for crystallization. The crystal structure of DTNB-modified CcbP was determined by the single-wavelength anomalous diffraction method. Structure analysis indicated that DTNB modification facilitated crystallization of CcbP by inducing polar interactions in the crystal lattice. DTNB-mediated cysteine modification was demonstrated to have little effect on the overall structure and the Ca2+ binding of CcbP. Thus, DTNB modification may provide a simple and general approach for protein modification to improve the success of crystallization screening.

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