3UAJ image
Deposition Date 2011-10-21
Release Date 2011-12-14
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3UAJ
Title:
Crystal structure of the envelope glycoprotein ectodomain from dengue virus serotype 4 in complex with the fab fragment of the chimpanzee monoclonal antibody 5H2
Biological Source:
Source Organism:
Dengue virus 4 (Taxon ID: 11070)
Pan troglodytes (Taxon ID: 9598)
Method Details:
Experimental Method:
Resolution:
3.23 Å
R-Value Free:
0.24
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:envelope protein
Chain IDs:A (auth: B), D (auth: A)
Chain Length:433
Number of Molecules:2
Biological Source:Dengue virus 4
Polymer Type:polypeptide(L)
Molecule:Heavy chain, monoclonal antibody 5H2
Chain IDs:B (auth: H), E (auth: C)
Chain Length:236
Number of Molecules:2
Biological Source:Pan troglodytes
Polymer Type:polypeptide(L)
Molecule:Light chain, monoclonal antibody 5H2
Chain IDs:C (auth: L), F (auth: D)
Chain Length:215
Number of Molecules:2
Biological Source:Pan troglodytes
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Structural insights into the neutralization mechanism of a higher primate antibody against dengue virus.
Embo J. 31 767 779 (2012)
PMID: 22139356 DOI: 10.1038/emboj.2011.439

Abstact

The four serotypes of dengue virus (DENV-1 to -4) cause the most important emerging viral disease. Protein E, the principal viral envelope glycoprotein, mediates fusion of the viral and endosomal membranes during virus entry and is the target of neutralizing antibodies. However, the epitopes of strongly neutralizing human antibodies have not been described despite their importance to vaccine development. The chimpanzee Mab 5H2 potently neutralizes DENV-4 by binding to domain I of E. The crystal structure of Fab 5H2 bound to E from DENV-4 shows that antibody binding prevents formation of the fusogenic hairpin conformation of E, which together with in-vitro assays, demonstrates that 5H2 neutralizes by blocking membrane fusion in the endosome. Furthermore, we show that human sera from patients recovering from DENV-4 infection contain antibodies that bind to the 5H2 epitope region on domain I. This study, thus, provides new information and tools for effective vaccine design to prevent dengue disease.

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Primary Citation of related structures