3UAF image
Entry Detail
PDB ID:
3UAF
Keywords:
Title:
Crystal Structure of a TTR-52 mutant of C. elegans
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-10-21
Release Date:
2012-10-24
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:TTR-52
Mutations:E50A,D51A,S52A,L53A,P54A,L55A
Chain IDs:A
Chain Length:117
Number of Molecules:1
Biological Source:Caenorhabditis elegans
Primary Citation
Structural study of TTR-52 reveals the mechanism by which a bridging molecule mediates apoptotic cell engulfment
Genes Dev. 26 1339 1350 (2012)
PMID: 22713871 DOI: 10.1101/gad.187815.112

Abstact

During apoptosis, apoptotic cells are removed by professional phagocytes or neighboring engulfing cells either directly through phagocytic receptors or indirectly through bridging molecules that cross-link dying cells to phagocytes. However, how bridging molecules recognize "eat me" signals and phagocytic receptors to mediate engulfment remains unclear. Here, we report the structural and functional studies of Caenorhabditis elegans TTR-52, a recently identified bridging molecule that cross-links surface-exposed phosphatidylserine (PtdSer) on apoptotic cells to the CED-1 receptor on phagocytes. Crystal structure studies show that TTR-52 has an open β-barrel-like structure with some similarities to the PKCα-C2 domain. TTR-52 is proposed to bind PtdSer via an "ion-mediating" PtdSer-binding mode. Intensive functional studies show that CED-1 binds TTR-52 through its N-terminal EMI domain and that the hydrophobic region of the TTR-52 C terminus is involved in this interaction. In addition, unlike other PtdSer-binding domains, TTR-52 forms dimers, and its dimerization is important for its function in vivo. Our results reveal the first full-length structure of a bridging molecule and the mechanism underlying bridging molecule-mediated apoptotic cell recognition.

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