3U9P image
Entry Detail
PDB ID:
3U9P
Keywords:
Title:
Crystal Structure of Murine Siderocalin in Complex with an Fab Fragment
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2011-10-19
Release Date:
2013-05-01
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.29
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Neutrophil gelatinase-associated lipocalin
Chain IDs:A (auth: C), B (auth: D)
Chain Length:182
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Monoclonal Fab Fragment Heavy Chain
Chain IDs:C (auth: H), D (auth: K)
Chain Length:216
Number of Molecules:2
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Description:Monoclonal Fab Fragment Light Chain
Chain IDs:E (auth: L), F (auth: M)
Chain Length:212
Number of Molecules:2
Biological Source:Rattus norvegicus
Primary Citation
Siderocalin/Lcn2/NGAL/24p3 does not drive apoptosis through gentisic acid mediated iron withdrawal in hematopoietic cell lines.
Plos One 7 e43696 e43696 (2012)
PMID: 22928018 DOI: 10.1371/journal.pone.0043696

Abstact

Siderocalin (also lipocalin 2, NGAL or 24p3) binds iron as complexes with specific siderophores, which are low molecular weight, ferric ion-specific chelators. In innate immunity, siderocalin slows the growth of infecting bacteria by sequestering bacterial ferric siderophores. Siderocalin also binds simple catechols, which can serve as siderophores in the damaged urinary tract. Siderocalin has also been proposed to alter cellular iron trafficking, for instance, driving apoptosis through iron efflux via BOCT. An endogenous siderophore composed of gentisic acid (2,5-dihydroxybenzoic acid) substituents was proposed to mediate cellular efflux. However, binding studies reported herein contradict the proposal that gentisic acid forms high-affinity ternary complexes with siderocalin and iron, or that gentisic acid can serve as an endogenous siderophore at neutral pH. We also demonstrate that siderocalin does not induce cellular iron efflux or stimulate apoptosis, questioning the role siderocalin plays in modulating iron metabolism.

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