3U97 image
Deposition Date 2011-10-18
Release Date 2012-02-22
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3U97
Keywords:
Title:
1.1 Angstrom-resolution crystal structure of the Brucella abortus ribonuclease toxin, BrnT
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.10 Å
R-Value Free:
0.15
R-Value Work:
0.13
R-Value Observed:
0.14
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ribonuclease toxin BrnT
Gene (Uniprot):BruAb1_0981
Chain IDs:A
Chain Length:114
Number of Molecules:1
Biological Source:Brucella abortus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Molecular Structure and Function of the Novel BrnT/BrnA Toxin-Antitoxin System of Brucella abortus.
J.Biol.Chem. 287 12098 12110 (2012)
PMID: 22334680 DOI: 10.1074/jbc.M111.332163

Abstact

Type II toxin-antitoxin (TA) systems are expressed from two-gene operons that encode a cytoplasmic protein toxin and its cognate protein antitoxin. These gene cassettes are often present in multiple copies on bacterial chromosomes, where they have been reported to regulate stress adaptation and persistence during antimicrobial treatment. We have identified a novel type II TA cassette in the intracellular pathogen Brucella abortus that consists of the toxin gene, brnT, and its antitoxin, brnA. BrnT is coexpressed and forms a 2:2 tetrameric complex with BrnA, which neutralizes BrnT toxicity. The BrnT(2)-BrnA(2) tetramer binds its own promoter via BrnA, and autorepresses its expression; its transcription is strongly induced in B. abortus by various stressors encountered by the bacterial cell during infection of a mammalian host. Although highly divergent at the primary sequence level, an atomic resolution (1.1 Å) crystal structure of BrnT reveals a secondary topology related to the RelE family of type II ribonuclease toxins. However, overall tertiary structural homology to other RelE family toxins is low. A functional characterization of BrnT by site-directed mutagenesis demonstrates a correspondence between its in vitro activity as a ribonuclease and control of bacteriostasis in vivo. We further present an analysis of the conserved and variable features of structure required for RNA scission in BrnT and the RelE toxin family. This structural investigation informs a model of the RelE-fold as an evolutionarily flexible scaffold that has been selected to bind structurally disparate antitoxins, and exhibit distinct toxin activities including RNA scission and DNA gyrase inhibition.

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